A²S² Lab — ALG-ALL-CODE Genomics Explorer

One of the world's largest single-lab algal genome collections — 229 genomes · Phylogenetic tree · NCBI · BLAST · PubMed

106 microalgae 123 macroalgae 8 lineages 15 BioProjects 4,200+ AF3 structures NYU Abu Dhabi
Lab website NCBI BioProject GitHub HuggingFace @a2s2lab
Open iToL NCBI Common Tree

Hover nodes for species details · Colors = algal division · Click leaf = NCBI links · Radial layout inspired by iToL. For full interactive phylogenetics embed iToL via API or use NCBI Common Tree.

# Species / Strain ↕ Division ↕ Type ↕ Genome ↕ Env Strain / Accession BioProject NCBI Links BLAST Publication
AccessionTitleOrganismsBioSamplesSRAStatusYearAll Links
Species by algal division (229 total)
Top 10 BioProjects by SRA run count
Genome size distribution (microalgae, by division)
Submissions by year
Micro vs Macro split
Live NCBI PubMed search via eUtils API — real-time results
Quick: All KSA papers AlgaGPT LA4SR NiTRO MED4 CrY2H ALG-ALL-CODE papers Macroalgal genomes MED4 PPI Chlamydomonas
Key A²S² Lab publications
Quick BLAST search
Paste nucleotide/protein sequence or NCBI accession — choose BLAST program to launch on NCBI
Preset accessions: MED4 chr (NC_005072.1) C. reinhardtii 18S P. tricornutum
Bioinformatics & genomics tools
Genome browsers for A²S² organisms
AI-powered & emerging tools (recommended 2025–2026)
Embed options for the website
Ask anything about A²S² Lab organisms, accessions, or genomics data
Lab website
Quick: Chlorophyta count Dunaliella accession Ochrophyta species Publications SRA total Embargo UAE species Largest genome ALG-ALL-CODE AF3 species
Download the genome table:
Cite this dataset: A²S² Lab, NYU Abu Dhabi. ALG-ALL-CODE algal genome resource (2026). Zenodo. DOI: 10.5281/zenodo.20485819